This web page was produced as an assignment for Genetics 677, an undergraduate course at UW-Madison
Two proteins for Two Purposes
In searching for the cadherin 23 human protein, multiple sequences were displayed. The smallest, CDH23, is the cadherin protein itself, in a finalized in vivo state. However, such finalized proteins are not found in the database for other model organisms. In order to be able to compare amino acid sequences between organisms to establish a predicted phylogeny, both the purified protein and a "cadherin-like" protein are listed below, and cadherin-like 23 was used in all phylogenic trees. See the homology/phylogeny tab to view trees and alignment scores.
CDH23 Protein
Accession number: AAQ88980
GI number: 37182356
Size: 530 amino acids
FASTA formatted protein sequence:
GI number: 37182356
Size: 530 amino acids
FASTA formatted protein sequence:
| cdh23_protein_fasta.docx |
Cadherin-23 precursor protein
Accession number: CAI13626.1
GI number:55962202
Size: 3359 AAs
FASTA formatted protein sequence:
GI number:55962202
Size: 3359 AAs
FASTA formatted protein sequence:
| fasta_formatted_cadherin-like_23.doc |
Links to protein pages:
Homology/Phylogeny
Protein Domains
Proteomic Info
Protein Network Interations
Homology/Phylogeny
Protein Domains
Proteomic Info
Protein Network Interations
Reference:
NCBI Protein: http://www.ncbi.nlm.nih.gov/protein/
NCBI Protein: http://www.ncbi.nlm.nih.gov/protein/
Ben Hofeld, [email protected], last updated: 5.15.2010, Link to course page:www.gen677.weebly.com
